PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.C5CLY
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 1143aa    MW: 128122 Da    PI: 9.4303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.C5CLYgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.24.4e-094682341
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqck 41
                      W ++E e++++a +++G++ Wk++a+ +  +R+ +++ 
      Aradu.C5CLY 46 QWNKDELERFYEAYRKYGKD-WKKVAAAVR-NRSVEMVE 82
                     6*****************99.*********.***98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-104290IPR009057Homeodomain-like
PROSITE profilePS5129310.9934295IPR017884SANT domain
SMARTSM007174.7E-54391IPR001005SANT/Myb domain
PfamPF002498.7E-84686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-44683IPR009057Homeodomain-like
CDDcd001676.87E-64781No hitNo description
PfamPF065844.5E-33634734IPR033471DIRP domain
SMARTSM011359.7E-57634735IPR033471DIRP domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1143 aa     Download sequence    Send to blast
MAPTRKPRSM NKRFSSLNEV SPEKEGMNSN KNKQKKKKLS DKLGSQWNKD ELERFYEAYR  60
KYGKDWKKVA AAVRNRSVEM VEALYNMNRA YLSLPEGTAS VVGLIAMMTD HYNVLEESDS  120
EKESIDSPGS RKPVKRKRGK IELGASKDSV HTQSIASNDG CLSLLKRRRF DGSQPRAVGK  180
RTPRVPVYYS YKKDERENYV SPNKRMLKSV FDANDDEVAH VAALALTEAA KRGGSPQVSQ  240
TPHRRSQQKV SPVQSWERMQ QSGTVPAKFY DTYLDEEFME GSIESRGAEN GEQARDTSSL  300
KDMEGSGTVE VNQKRKKVYR KKERKENVGN HLLDDGGEAC SGTEEGLNFS LKEKIDVEVT  360
NAKPQKRSKK LFFGADESSA VDALHALADL SLMIPASTME SESSVQLKEE RTTVDKDEKP  420
AVPEVTSTSQ NRDKSKLSLK QKVVPSVRGV ELSSSRKSKV VRTTINDKES KALFESKELL  480
PTDDKTWKRK RKPMVLKLAN AKHDSDPNDP LNDEAVDEED KPLIKGKHTG QTSTPAKQKS  540
VRSSESSLCA DQKDLIVSTA EVQLVSLPTK RISKRKMSLQ RTFIPKEKSS ENKLKGQPNK  600
YSSQPQDKAS ILKEKLSSCL SSSMIRRWCA FEWFYSAIDY PWFSKREFME YLNHVGLGNI  660
PRLTRVEWSV IKSSLGKPRR FSEHFLREER QKLEQYRQSV RKHYTELRTG IRDGLPTDLA  720
KPLYVGQRVI ALHPKTREIH DGSVLTVDHD KCRVQFDLPE LGVEFVMDID CMPLNPLDNM  780
PEALRRQVGA CKFPCISKEP QMDGISSFGG CLTCTSSNPV ERAPNLAKQE KQAVGAQPCN  840
MTDHQTKEAN IHALSELTRF LDKKEILLME LKNSNNAILE NQIDSGSFKD SEALGKHYAT  900
VSNALLHLRQ RNTYTGNSLP LKPQANLNVH DGLPGMLDGS LAQELGSTVI EIIKGSRVKA  960
HAMVDAAFRA LASVKEGEDA FLKIGQVLDS INYQQLAPNT SLPAMKSQEQ GNGSLDNHTR  1020
SIFSSSEPLL GDVSGQKLRN DSDKVDAQIP SELITSCVAI LIMIQLTFIT MYLRILTTFL  1080
ETVSSTQTCT ERQYPPSDVA QILDSAVTSL HPCCPQNLPI YREIQMCMGR IKTQILALIP  1140
TST
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1569576KRISKRKM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353627e-84AC235362.1 Glycine max strain Williams 82 clone GM_WBb0099N18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015968595.10.0PREDICTED: protein ALWAYS EARLY 3 isoform X4
TrEMBLA0A0B2Q7U70.0A0A0B2Q7U7_GLYSO; Protein ALWAYS EARLY 3
STRINGGLYMA20G37826.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17833369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21430.20.0DNA binding